Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs35742014 chr7:64291987 G/A 0.000144 502 31.47 32.5 31.27 KM Plot
THCA rs35751290 chr19:2139357 A/G 0.000124 485 32.9 31.7 31.43 KM Plot
THCA rs35754514 chr10:29327825 G/A 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs35786939 chr2:87029010 G/C 6.51E-8 502 32.77 28.43 32.1 KM Plot
THCA rs35815787 chr2:86929003 G/T 7.55E-10 499 32.15 27.27 20.92 KM Plot
THCA rs35941950 chr3:62672675 C/T 1.46E-8 500 31.67 33.5 16.22 KM Plot
THCA rs35941975 chr19:5962553 G/A 6.99E-5 500 31.5 34.18 20.2 KM Plot
THCA rs35948313 chr9:123781329 C/T 2.7E-5 503 31.7 31.47 21.97 KM Plot
THCA rs35991466 chr1:152878006 G/A 8.94E-5 502 31.47 33.7 58.43 KM Plot
THCA rs36030838 chr2:238386195 A/G 0 497 31.43 34.18 39.2 KM Plot
THCA rs36033488 chr1:152860594 T/C 9.02E-5 502 31.47 34.4 58.43 KM Plot
THCA rs36119403 chr7:32792933 C/T 9.81E-5 501 31.47 31.47 32.1 KM Plot
THCA rs367583191 chr6:100032808 AAAAG/A 8.75E-5 493 31.7 32.27 24.55 KM Plot
THCA rs367631845 chr10:81612628 G/T 7.29E-10 487 31.72 31.03 14.52 KM Plot
THCA rs367840053 chr10:29331321 AAAACAAACAAAC/A 2.82E-9 500 31.77 30.13 29.28 KM Plot